Detailed information of SNP:
|
SNP ID:
sf1214482677(Gbrowse)
Chromosome: chr12 Position: 14482677 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1351 | 84.16% | 15.84% |
| All Indica | 732 | 71.72% | 28.28% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 334 | 55.69% | 44.31% |
| Indica II | 199 | 92.46% | 7.54% |
| Indica Intermediate | 199 | 77.89% | 22.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214482677 | G->A | INTERGENIC | None |