Detailed information of SNP:
|
SNP ID:
sf1214504948(Gbrowse)
Chromosome: chr12 Position: 14504948 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 79.00% | 21.00% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 474 | 42.19% | 57.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 317 | 23.66% | 76.34% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 64 | 68.75% | 31.25% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214504948 | A->G | LOC_Os12g25220(LOC_Os12g25220.1) | INTRON |