Detailed information of SNP:
|
SNP ID:
sf1214511055(Gbrowse)
Chromosome: chr12 Position: 14511055 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 76.36% | 23.64% |
| All Indica | 798 | 96.87% | 3.13% |
| All Japonica | 496 | 39.92% | 60.08% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 334 | 21.86% | 78.14% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214511055 | G->A | LOC_Os12g25230(LOC_Os12g25230.1) | INTRON |