Detailed information of SNP:
|
SNP ID:
sf1214512182(Gbrowse)
Chromosome: chr12 Position: 14512182 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 92.37% | 7.63% |
| All Indica | 794 | 98.99% | 1.01% |
| All Japonica | 488 | 81.15% | 18.85% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 328 | 95.73% | 4.27% |
| Tropical Japonica | 93 | 31.18% | 68.82% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214512182 | G->A | INTERGENIC | None |