Detailed information of SNP:
|
SNP ID:
sf1214512948(Gbrowse)
Chromosome: chr12 Position: 14512948 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1372 | 81.63% | 18.37% |
| All Indica | 755 | 67.95% | 32.05% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 355 | 69.86% | 30.14% |
| Indica II | 201 | 71.64% | 28.36% |
| Indica Intermediate | 199 | 60.80% | 39.20% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214512948 | C->A | INTERGENIC | None |