Detailed information of SNP:
|
SNP ID:
sf1214523233(Gbrowse)
Chromosome: chr12 Position: 14523233 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 70.13% | 29.87% |
| All Indica | 797 | 73.15% | 26.85% |
| All Japonica | 496 | 77.02% | 22.98% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 65.07% | 34.93% |
| Indica II | 212 | 81.13% | 18.87% |
| Indica Intermediate | 210 | 79.52% | 20.48% |
| Temperate Japonica | 335 | 85.07% | 14.93% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 67 | 62.69% | 37.31% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214523233 | T->C | INTERGENIC | None |