Detailed information of SNP:
|
SNP ID:
sf1214523685(Gbrowse)
Chromosome: chr12 Position: 14523685 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 89.80% | 10.20% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 491 | 79.02% | 20.98% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 85.93% | 14.07% |
| Tropical Japonica | 92 | 61.96% | 38.04% |
| Japonica Intermediate | 65 | 67.69% | 32.31% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214523685 | G->A | INTERGENIC | None |