Detailed information of SNP:
|
SNP ID:
sf1214546704(Gbrowse)
Chromosome: chr12 Position: 14546704 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 51.87% | 48.13% |
| All Indica | 799 | 30.04% | 69.96% |
| All Japonica | 497 | 78.47% | 21.53% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 37.87% | 62.13% |
| Indica II | 213 | 20.66% | 79.34% |
| Indica Intermediate | 211 | 25.59% | 74.41% |
| Temperate Japonica | 335 | 87.46% | 12.54% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214546704 | G->A | INTERGENIC | None |