Detailed information of SNP:
|
SNP ID:
sf1214549610(Gbrowse)
Chromosome: chr12 Position: 14549610 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 63.21% | 36.79% |
| All Indica | 799 | 55.57% | 44.43% |
| All Japonica | 497 | 83.70% | 16.30% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 78.13% | 21.87% |
| Indica II | 213 | 26.76% | 73.24% |
| Indica Intermediate | 211 | 44.55% | 55.45% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214549610 | G->A | INTERGENIC | None |