Detailed information of SNP:
|
SNP ID:
sf1214551522(Gbrowse)
Chromosome: chr12 Position: 14551522 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 92.02% | 7.98% |
| All Indica | 796 | 97.61% | 2.39% |
| All Japonica | 486 | 83.33% | 16.67% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 331 | 88.22% | 11.78% |
| Tropical Japonica | 89 | 74.16% | 25.84% |
| Japonica Intermediate | 66 | 71.21% | 28.79% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214551522 | G->A | INTERGENIC | None |