Detailed information of SNP:
|
SNP ID:
sf1214565408(Gbrowse)
Chromosome: chr12 Position: 14565408 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 70.56% | 29.44% |
| All Indica | 794 | 58.94% | 41.06% |
| All Japonica | 496 | 84.27% | 15.73% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 79.36% | 20.64% |
| Indica II | 212 | 31.60% | 68.40% |
| Indica Intermediate | 209 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 93 | 58.06% | 41.94% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214565408 | C->T | LOC_Os12g25300(LOC_Os12g25300.1) | Synonymous |