Detailed information of SNP:
|
SNP ID:
sf1214566389(Gbrowse)
Chromosome: chr12 Position: 14566389 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1245 | 80.32% | 19.68% |
| All Indica | 689 | 75.47% | 24.53% |
| All Japonica | 468 | 90.60% | 9.40% |
| Aus | 44 | 56.82% | 43.18% |
| Indica I | 350 | 86.86% | 13.14% |
| Indica II | 161 | 55.90% | 44.10% |
| Indica Intermediate | 178 | 70.79% | 29.21% |
| Temperate Japonica | 329 | 96.66% | 3.34% |
| Tropical Japonica | 80 | 70.00% | 30.00% |
| Japonica Intermediate | 59 | 84.75% | 15.25% |
| Group VI/Aromatic | 10 | 30.00% | 70.00% |
| Intermediate | 34 | 82.35% | 17.65% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214566389 | A->G | INTERGENIC | None |