Detailed information of SNP:
|
SNP ID:
sf1214566801(Gbrowse)
Chromosome: chr12 Position: 14566801 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 64.38% | 35.62% |
| All Indica | 795 | 57.36% | 42.64% |
| All Japonica | 497 | 84.10% | 15.90% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 78.40% | 21.60% |
| Indica II | 212 | 30.19% | 69.81% |
| Indica Intermediate | 208 | 47.12% | 52.88% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214566801 | G->A | INTERGENIC | None |