Detailed information of SNP:
SNP ID:
sf1214575762(Gbrowse)
Chromosome: chr12 Position: 14575762 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1375 | 66.98% | 33.02% |
All Indica | 768 | 60.94% | 39.06% |
All Japonica | 486 | 84.36% | 15.64% |
Aus | 65 | 29.23% | 70.77% |
Indica I | 361 | 78.39% | 21.61% |
Indica II | 201 | 34.33% | 65.67% |
Indica Intermediate | 206 | 56.31% | 43.69% |
Temperate Japonica | 331 | 92.45% | 7.55% |
Tropical Japonica | 91 | 65.93% | 34.07% |
Japonica Intermediate | 64 | 68.75% | 31.25% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1214575762 | C->T | INTERGENIC | None |