Detailed information of SNP:
|
SNP ID:
sf1214587450(Gbrowse)
Chromosome: chr12 Position: 14587450 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1355 | 88.34% | 11.66% |
| All Indica | 777 | 85.71% | 14.29% |
| All Japonica | 492 | 93.90% | 6.10% |
| Aus | 42 | 90.48% | 9.52% |
| Indica I | 371 | 95.42% | 4.58% |
| Indica II | 203 | 71.92% | 28.08% |
| Indica Intermediate | 203 | 81.77% | 18.23% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 91 | 84.62% | 15.38% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 8 | 25.00% | 75.00% |
| Intermediate | 36 | 80.56% | 19.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214587450 | T->A | LOC_Os12g25320(LOC_Os12g25320.1) | INTRON |