Detailed information of SNP:
|
SNP ID:
sf1214590167(Gbrowse)
Chromosome: chr12 Position: 14590167 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 93.45% | 6.55% |
| All Indica | 785 | 89.30% | 10.70% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 82.51% | 17.49% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 207 | 92.27% | 7.73% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214590167 | C->T | LOC_Os12g25320(LOC_Os12g25320.1) | Non-Synonymous SNP |