Detailed information of SNP:
|
SNP ID:
sf1214590271(Gbrowse)
Chromosome: chr12 Position: 14590271 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 88.36% | 11.64% |
| All Indica | 770 | 84.55% | 15.45% |
| All Japonica | 485 | 92.58% | 7.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 93.15% | 6.85% |
| Indica II | 199 | 73.37% | 26.63% |
| Indica Intermediate | 206 | 80.10% | 19.90% |
| Temperate Japonica | 330 | 97.88% | 2.12% |
| Tropical Japonica | 89 | 76.40% | 23.60% |
| Japonica Intermediate | 66 | 87.88% | 12.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214590271 | G->A | LOC_Os12g25320(LOC_Os12g25320.1) | Non-Synonymous SNP |