Detailed information of SNP:
|
SNP ID:
sf1214597445(Gbrowse)
Chromosome: chr12 Position: 14597445 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 81.36% | 18.64% |
| All Indica | 791 | 76.86% | 23.14% |
| All Japonica | 497 | 88.13% | 11.87% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 370 | 66.49% | 33.51% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 209 | 81.82% | 18.18% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214597445 | G->A | INTERGENIC | None |