Detailed information of SNP:
|
SNP ID:
sf1214607418(Gbrowse)
Chromosome: chr12 Position: 14607418 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1270 | 81.97% | 18.03% |
| All Indica | 674 | 77.00% | 23.00% |
| All Japonica | 483 | 88.61% | 11.39% |
| Aus | 63 | 85.71% | 14.29% |
| Indica I | 292 | 78.08% | 21.92% |
| Indica II | 191 | 70.68% | 29.32% |
| Indica Intermediate | 191 | 81.68% | 18.32% |
| Temperate Japonica | 330 | 97.27% | 2.73% |
| Tropical Japonica | 89 | 61.80% | 38.20% |
| Japonica Intermediate | 64 | 81.25% | 18.75% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 36 | 77.78% | 22.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214607418 | G->A | LOC_Os12g25330(LOC_Os12g25330.1) | INTRON |