Detailed information of SNP:
|
SNP ID:
sf1214612471(Gbrowse)
Chromosome: chr12 Position: 14612471 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 72.30% | 27.70% |
| All Indica | 796 | 96.36% | 3.64% |
| All Japonica | 496 | 28.43% | 71.57% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 209 | 93.30% | 6.70% |
| Temperate Japonica | 334 | 10.48% | 89.52% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214612471 | A->G | LOC_Os12g25340(LOC_Os12g25340.1) | Synonymous |