Detailed information of SNP:
|
SNP ID:
sf1214613429(Gbrowse)
Chromosome: chr12 Position: 14613429 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 93.38% | 6.62% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 497 | 88.13% | 11.87% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214613429 | C->T | LOC_Os12g25340(LOC_Os12g25340.1) | Synonymous |