Detailed information of SNP:
|
SNP ID:
sf1214613506(Gbrowse)
Chromosome: chr12 Position: 14613506 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 71.48% | 28.52% |
| All Indica | 786 | 95.04% | 4.96% |
| All Japonica | 497 | 28.57% | 71.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 96.24% | 3.76% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 204 | 93.14% | 6.86% |
| Temperate Japonica | 335 | 10.45% | 89.55% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214613506 | A->C | LOC_Os12g25340(LOC_Os12g25340.1) | Non-Synonymous SNP |