Detailed information of SNP:
|
SNP ID:
sf1214614187(Gbrowse)
Chromosome: chr12 Position: 14614187 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 61.85% | 38.15% |
| All Indica | 773 | 78.27% | 21.73% |
| All Japonica | 496 | 28.43% | 71.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 82.43% | 17.57% |
| Indica II | 202 | 78.22% | 21.78% |
| Indica Intermediate | 201 | 70.65% | 29.35% |
| Temperate Japonica | 335 | 10.15% | 89.85% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 67 | 41.79% | 58.21% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214614187 | A->G | LOC_Os12g25340(LOC_Os12g25340.1) | Non-Synonymous SNP |