Detailed information of SNP:
|
SNP ID:
sf1214616016(Gbrowse)
Chromosome: chr12 Position: 14616016 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 65.27% | 34.73% |
| All Indica | 785 | 84.20% | 15.80% |
| All Japonica | 497 | 28.77% | 71.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 89.43% | 10.57% |
| Indica II | 210 | 82.86% | 17.14% |
| Indica Intermediate | 206 | 76.21% | 23.79% |
| Temperate Japonica | 335 | 10.75% | 89.25% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214616016 | G->T | INTERGENIC | None |