Detailed information of SNP:
|
SNP ID:
sf1214616285(Gbrowse)
Chromosome: chr12 Position: 14616285 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1363 | 56.13% | 43.87% |
| All Indica | 745 | 71.01% | 28.99% |
| All Japonica | 496 | 27.22% | 72.78% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 346 | 77.75% | 22.25% |
| Indica II | 202 | 67.82% | 32.18% |
| Indica Intermediate | 197 | 62.44% | 37.56% |
| Temperate Japonica | 334 | 9.88% | 90.12% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214616285 | G->A | INTERGENIC | None |