Detailed information of SNP:
|
SNP ID:
sf1214617954(Gbrowse)
Chromosome: chr12 Position: 14617954 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 82.87% | 17.13% |
| All Indica | 786 | 78.88% | 21.12% |
| All Japonica | 486 | 87.04% | 12.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 90.59% | 9.41% |
| Indica II | 204 | 55.39% | 44.61% |
| Indica Intermediate | 210 | 80.95% | 19.05% |
| Temperate Japonica | 331 | 95.47% | 4.53% |
| Tropical Japonica | 89 | 62.92% | 37.08% |
| Japonica Intermediate | 66 | 77.27% | 22.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214617954 | C->T | INTERGENIC | None |