Detailed information of SNP:
|
SNP ID:
sf1214618153(Gbrowse)
Chromosome: chr12 Position: 14618153 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 71.47% | 28.53% |
| All Indica | 791 | 94.94% | 5.06% |
| All Japonica | 496 | 28.83% | 71.17% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 372 | 97.85% | 2.15% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 334 | 10.78% | 89.22% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214618153 | C->T | INTERGENIC | None |