Detailed information of SNP:
|
SNP ID:
sf1214619458(Gbrowse)
Chromosome: chr12 Position: 14619458 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1381 | 83.78% | 16.22% |
| All Indica | 770 | 80.91% | 19.09% |
| All Japonica | 489 | 85.89% | 14.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 91.11% | 8.89% |
| Indica II | 193 | 59.07% | 40.93% |
| Indica Intermediate | 206 | 83.01% | 16.99% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 89 | 59.55% | 40.45% |
| Japonica Intermediate | 65 | 76.92% | 23.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214619458 | A->C | INTERGENIC | None |