Detailed information of SNP:
|
SNP ID:
sf1214619580(Gbrowse)
Chromosome: chr12 Position: 14619580 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 67.36% | 32.64% |
| All Indica | 770 | 88.57% | 11.43% |
| All Japonica | 496 | 28.63% | 71.37% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 368 | 94.29% | 5.71% |
| Indica II | 203 | 89.66% | 10.34% |
| Indica Intermediate | 199 | 76.88% | 23.12% |
| Temperate Japonica | 334 | 10.48% | 89.52% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214619580 | G->A | INTERGENIC | None |