Detailed information of SNP:
|
SNP ID:
sf1214619618(Gbrowse)
Chromosome: chr12 Position: 14619618 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 70.79% | 29.21% |
| All Indica | 780 | 93.85% | 6.15% |
| All Japonica | 497 | 28.97% | 71.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 97.31% | 2.69% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 197 | 86.80% | 13.20% |
| Temperate Japonica | 335 | 11.04% | 88.96% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214619618 | G->A | INTERGENIC | None |