Detailed information of SNP:
|
SNP ID:
sf1214619793(Gbrowse)
Chromosome: chr12 Position: 14619793 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 70.35% | 29.65% |
| All Indica | 791 | 92.41% | 7.59% |
| All Japonica | 496 | 29.03% | 70.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 205 | 82.93% | 17.07% |
| Temperate Japonica | 334 | 11.08% | 88.92% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214619793 | G->T | INTERGENIC | None |