Detailed information of SNP:
|
SNP ID:
sf1214622350(Gbrowse)
Chromosome: chr12 Position: 14622350 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 69.20% | 30.80% |
| All Indica | 774 | 90.70% | 9.30% |
| All Japonica | 496 | 29.44% | 70.56% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 363 | 94.77% | 5.23% |
| Indica II | 207 | 93.24% | 6.76% |
| Indica Intermediate | 204 | 80.88% | 19.12% |
| Temperate Japonica | 335 | 11.34% | 88.66% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 67 | 44.78% | 55.22% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214622350 | G->T | INTERGENIC | None |