Detailed information of SNP:
|
SNP ID:
sf1214623376(Gbrowse)
Chromosome: chr12 Position: 14623376 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 69.25% | 30.75% |
| All Indica | 775 | 90.97% | 9.03% |
| All Japonica | 497 | 28.77% | 71.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 95.05% | 4.95% |
| Indica II | 210 | 93.33% | 6.67% |
| Indica Intermediate | 201 | 81.09% | 18.91% |
| Temperate Japonica | 335 | 10.75% | 89.25% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214623376 | T->C | INTERGENIC | None |