Detailed information of SNP:
|
SNP ID:
sf1214624145(Gbrowse)
Chromosome: chr12 Position: 14624145 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 60.03% | 39.97% |
| All Indica | 782 | 84.53% | 15.47% |
| All Japonica | 496 | 16.94% | 83.06% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 367 | 93.19% | 6.81% |
| Indica II | 208 | 80.77% | 19.23% |
| Indica Intermediate | 207 | 72.95% | 27.05% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 67 | 29.85% | 70.15% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214624145 | G->A | INTERGENIC | None |