Detailed information of SNP:
|
SNP ID:
sf1214625388(Gbrowse)
Chromosome: chr12 Position: 14625388 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 59.93% | 40.07% |
| All Indica | 790 | 84.18% | 15.82% |
| All Japonica | 497 | 16.70% | 83.30% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 372 | 92.74% | 7.26% |
| Indica II | 210 | 80.00% | 20.00% |
| Indica Intermediate | 208 | 73.08% | 26.92% |
| Temperate Japonica | 335 | 6.27% | 93.73% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214625388 | T->G | LOC_Os12g25350(LOC_Os12g25350.1) | INTRON |