Detailed information of SNP:
|
SNP ID:
sf1214626647(Gbrowse)
Chromosome: chr12 Position: 14626647 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 87.87% | 12.13% |
| All Indica | 798 | 97.37% | 2.63% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214626647 | C->T | LOC_Os12g25350(LOC_Os12g25350.1) | INTRON |