Detailed information of SNP:
|
SNP ID:
sf1214627597(Gbrowse)
Chromosome: chr12 Position: 14627597 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 57.88% | 42.12% |
| All Indica | 789 | 80.74% | 19.26% |
| All Japonica | 496 | 16.73% | 83.27% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 373 | 89.81% | 10.19% |
| Indica II | 211 | 75.83% | 24.17% |
| Indica Intermediate | 205 | 69.27% | 30.73% |
| Temperate Japonica | 334 | 6.59% | 93.41% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214627597 | G->A | LOC_Os12g25350(LOC_Os12g25350.1) | Non-Synonymous SNP |