Detailed information of SNP:
|
SNP ID:
sf1214633501(Gbrowse)
Chromosome: chr12 Position: 14633501 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 67.33% | 32.67% |
| All Indica | 791 | 63.46% | 36.54% |
| All Japonica | 497 | 83.70% | 16.30% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 62.13% | 37.87% |
| Indica II | 206 | 60.68% | 39.32% |
| Indica Intermediate | 210 | 68.57% | 31.43% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214633501 | T->C | LOC_Os12g25370(LOC_Os12g25370.1) | Non-Synonymous SNP |