Detailed information of SNP:
|
SNP ID:
sf1214634110(Gbrowse)
Chromosome: chr12 Position: 14634110 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 71.59% | 28.41% |
| All Indica | 775 | 94.84% | 5.16% |
| All Japonica | 496 | 29.23% | 70.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 97.29% | 2.71% |
| Indica II | 204 | 93.14% | 6.86% |
| Indica Intermediate | 202 | 92.08% | 7.92% |
| Temperate Japonica | 334 | 10.78% | 89.22% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214634110 | G->C | INTERGENIC | None |