Detailed information of SNP:
|
SNP ID:
sf1214635957(Gbrowse)
Chromosome: chr12 Position: 14635957 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 68.19% | 31.81% |
| All Indica | 776 | 89.43% | 10.57% |
| All Japonica | 497 | 28.57% | 71.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 91.11% | 8.89% |
| Indica II | 204 | 94.61% | 5.39% |
| Indica Intermediate | 201 | 81.09% | 18.91% |
| Temperate Japonica | 335 | 10.45% | 89.55% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214635957 | A->G | INTERGENIC | None |