Detailed information of SNP:
|
SNP ID:
sf1214639659(Gbrowse)
Chromosome: chr12 Position: 14639659 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1340 | 86.49% | 13.51% |
| All Indica | 749 | 82.64% | 17.36% |
| All Japonica | 470 | 90.85% | 9.15% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 363 | 89.53% | 10.47% |
| Indica II | 184 | 69.57% | 30.43% |
| Indica Intermediate | 202 | 82.18% | 17.82% |
| Temperate Japonica | 327 | 96.94% | 3.06% |
| Tropical Japonica | 81 | 72.84% | 27.16% |
| Japonica Intermediate | 62 | 82.26% | 17.74% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214639659 | G->A | LOC_Os12g25380(LOC_Os12g25380.1) | SNPs that introduce stop codons |