Detailed information of SNP:
|
SNP ID:
sf1214639811(Gbrowse)
Chromosome: chr12 Position: 14639811 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1372 | 83.38% | 16.62% |
| All Indica | 762 | 78.48% | 21.52% |
| All Japonica | 488 | 90.57% | 9.43% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 350 | 67.43% | 32.57% |
| Indica II | 208 | 92.79% | 7.21% |
| Indica Intermediate | 204 | 82.84% | 17.16% |
| Temperate Japonica | 332 | 96.99% | 3.01% |
| Tropical Japonica | 89 | 68.54% | 31.46% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214639811 | G->A | LOC_Os12g25380(LOC_Os12g25380.1) | Non-Synonymous SNP |