Detailed information of SNP:
|
SNP ID:
sf1214641001(Gbrowse)
Chromosome: chr12 Position: 14641001 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 70.42% | 29.58% |
| All Indica | 765 | 66.01% | 33.99% |
| All Japonica | 486 | 86.83% | 13.17% |
| Aus | 63 | 28.57% | 71.43% |
| Indica I | 363 | 68.04% | 31.96% |
| Indica II | 198 | 56.57% | 43.43% |
| Indica Intermediate | 204 | 71.57% | 28.43% |
| Temperate Japonica | 331 | 95.77% | 4.23% |
| Tropical Japonica | 91 | 61.54% | 38.46% |
| Japonica Intermediate | 64 | 76.56% | 23.44% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214641001 | G->A | LOC_Os12g25380(LOC_Os12g25380.1) | INTRON |