Detailed information of SNP:
|
SNP ID:
sf1214641452(Gbrowse)
Chromosome: chr12 Position: 14641452 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 86.83% | 13.17% |
| All Indica | 789 | 96.20% | 3.80% |
| All Japonica | 473 | 70.19% | 29.81% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 97.58% | 2.42% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 207 | 94.20% | 5.80% |
| Temperate Japonica | 316 | 56.96% | 43.04% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214641452 | T->C | LOC_Os12g25380(LOC_Os12g25380.1) | INTRON |