Detailed information of SNP:
|
SNP ID:
sf1214641709(Gbrowse)
Chromosome: chr12 Position: 14641709 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 90.13% | 9.87% |
| All Indica | 767 | 89.96% | 10.04% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 61 | 39.34% | 60.66% |
| Indica I | 350 | 83.14% | 16.86% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 205 | 93.66% | 6.34% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214641709 | C->T | LOC_Os12g25380(LOC_Os12g25380.1) | INTRON |