Detailed information of SNP:
|
SNP ID:
sf1214641844(Gbrowse)
Chromosome: chr12 Position: 14641844 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 66.38% | 33.62% |
| All Indica | 787 | 60.86% | 39.14% |
| All Japonica | 497 | 83.90% | 16.10% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 371 | 65.77% | 34.23% |
| Indica II | 210 | 48.57% | 51.43% |
| Indica Intermediate | 206 | 64.56% | 35.44% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214641844 | A->T | LOC_Os12g25380(LOC_Os12g25380.1) | Non-Synonymous SNP |