Detailed information of SNP:
|
SNP ID:
sf1214641870(Gbrowse)
Chromosome: chr12 Position: 14641870 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 66.74% | 33.26% |
| All Indica | 793 | 60.40% | 39.60% |
| All Japonica | 497 | 85.31% | 14.69% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 373 | 65.95% | 34.05% |
| Indica II | 212 | 47.17% | 52.83% |
| Indica Intermediate | 208 | 63.94% | 36.06% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214641870 | C->T | LOC_Os12g25380(LOC_Os12g25380.1) | Non-Synonymous SNP |