Detailed information of SNP:
|
SNP ID:
sf1214643336(Gbrowse)
Chromosome: chr12 Position: 14643336 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 86.32% | 13.68% |
| All Indica | 792 | 85.23% | 14.77% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 370 | 76.49% | 23.51% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214643336 | C->T | LOC_Os12g25380(LOC_Os12g25380.1) | Non-Synonymous SNP |