Detailed information of SNP:
|
SNP ID:
sf1214644540(Gbrowse)
Chromosome: chr12 Position: 14644540 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 64.85% | 35.15% |
| All Indica | 758 | 84.04% | 15.96% |
| All Japonica | 496 | 28.43% | 71.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 86.89% | 13.11% |
| Indica II | 199 | 84.42% | 15.58% |
| Indica Intermediate | 193 | 78.24% | 21.76% |
| Temperate Japonica | 334 | 10.48% | 89.52% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214644540 | A->G | INTERGENIC | None |