Detailed information of SNP:
|
SNP ID:
sf1214646337(Gbrowse)
Chromosome: chr12 Position: 14646337 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 89.43% | 10.57% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 472 | 70.76% | 29.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 315 | 57.78% | 42.22% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214646337 | T->C | LOC_Os12g25390(LOC_Os12g25390.1) | Non-Synonymous SNP |